Cohort 1 student Marceli publishes in SoftwareX (Elsevier)

Cohort 1 student Marceli Wac publishes a journal article in SoftwareX (Elsevier) entitled: ‘CATS: Cloud-native time-series data annotation tool for intensive care.’

Marceli had the following to say about the publication: ‘Intensive care units are complex, data-rich healthcare environments which provide substantial opportunities for applications in machine learning. While certain solutions can be derived directly from data, complex problems require additional human input provided in the form of data annotations. Due to the large size and complexities associated with healthcare data, the existing software packages for time-series data annotation are infeasible for effective use in the clinical setting and frequently require significant time commitments and technical expertise.
Our software provides a comprehensive, end-to-end solution to the time-series data annotation and proposes a novel approach for a semi-automated annotation in the cloud. It allows for conducting large-scale, asynchronous data annotation activities across multiple, geographically distributed users. The adoption of our software could benefit the wider research community by enhancing existing datasets, creating novel avenues for research that uses them and allowing for meaningful data annotation within smaller and highly specialised populations.

Produced software has the potential to be used in variety of domains and in particular, research involving the clinical time-series data. It allows the staff non-technically trained in the domain of computer science (such as clinicians) to enhance the existing datasets by creating annotations and providing additional context to data, which could be used to build novel machnie learning algorithms and apply them to the previously unexplored problems. The tool is cloud based allows for large-scale, distributed annotation, meaning that once deployed – it could be used by any group of clinicians across the world simultaneously.’

Link to Paper: https://www.softxjournal.com/article/S2352-7110(23)00289-3/fulltext#secd1e1291

Cohort 1 student Marceli publishes in JMIR Human Factors

Cohort 1 student Marceli publishes in JMIR Human Factors entitled ‘Design and Evaluation of an Intensive Care Unit Dashboard Built in Response to the COVID-19 Pandemic: Semistructured Interview Study’.

Marceli had the following to say about the experience: ‘Dashboards and interactive displays are becoming increasingly prevalent in most health care settings and have the potential to streamline access to information, consolidate disparate data sources and deliver new insights. Our research focuses on intensive care units (ICUs) which are heavily instrumented, critical care environments that generate vast amounts of data and frequently require individualized support for each patient. Consequently, clinicians experience a high cognitive load, which can translate to suboptimal performance. The global COVID-19 pandemic exacerbated this problem by generating a large number of additional hospitalizations, which necessitated a new tool that would help manage ICUs’ census. In a previous study, we interviewed clinicians at the University Hospitals Bristol and Weston National Health Service Foundation Trust to capture the requirements for bespoke dashboards that would alleviate this problem.

This study aims to design, implement, and evaluate an ICU dashboard to allow for monitoring of the high volume of patients in need of critical care, particularly tailored to high-demand situations, such as those seen during the COVID-19 pandemic.

Building upon the previously gathered requirements, we developed a dashboard, integrated it within the ICU of a National Health Service trust, and allowed all staff to access our tool. For evaluation purposes, participants were recruited and interviewed following a 25-day period during which they were able to use the dashboard clinically. The semistructured interviews followed a topic guide aimed at capturing the usability of the dashboard, supplemented with additional questions asked post hoc to probe themes established during the interview. Interview transcripts were analyzed using a thematic analysis framework that combined inductive and deductive approaches and integrated the Technology Acceptance Model.

A total of 10 participants with 4 different roles in the ICU (6 consultants, 2 junior doctors, 1 nurse, and 1 advanced clinical practitioner) participated in the interviews. Our analysis generated 4 key topics that prevailed across the data: our dashboard met the usability requirements of the participants and was found useful and intuitive; participants perceived that it impacted their delivery of patient care by improving the access to the information and better equipping them to do their job; the tool was used in a variety of ways and for different reasons and tasks; and there were barriers to integration of our dashboard into practice, including familiarity with existing systems, which stifled the adoption of our tool.

Our findings show that the perceived utility of the dashboard had a positive impact on the clinicians’ workflows in the ICU. Improving access to information translated into more efficient patient care and transformed some of the existing processes. The introduction of our tool was met with positive reception, but its integration during the COVID-19 pandemic limited its adoption into practice.

This project informs the future developments pertaining to the use of dashboards and interactive displays within intensive care unit settings.’

Link to Paper: https://humanfactors.jmir.org/2023/1/e49438

 

Cohort 1 student Marceli participates in a WISH Workgroup at the CHI Conference in Hamburg

Cohort 1 student Marceli Wac participates in a WISH (Workgroup for Interactive Systems in Healthcare) at CHI Conference 2023 in Hamburg, Germany.

This involves a broader group of University of Bristol students and comprised of a Poster Presentation and a short paper. Marceli explains that this is an ‘Ancillary research avenue for my [his] PhD Thesis.’

Cohort 1 student Romana publishes in the Journal of Non-verbal Behaviour

Cohort 1 student Romana Burgess publishes a journal article in the Journal of Non-verbal Behaviour entitled: ‘A Quantitative Evaluation of Thin Slice Sampling for Parent–Infant Interactions.’

Romana had this to say about her paper: ‘Broadly, the paper looks at whether we can use brief observations (“thin slices”) of behaviours to approximate those same behaviours over a longer period of time. The purpose of this work is to find an approach to alleviate the “coding burden”, i.e., the amount of time that researchers spend coding behaviours from observational data. In essence, behavioural coding is extremely time-intensive and laborious, and this paper both explores and quantifies the value of thin slice sampling as an alternative approach.

The analysis is based on video data of interactions between parents and their infants. These data come from two cohort studies: the Avon Longitudinal Study of Parents and Children (ALSPAC) – based in Bristol – and Grown in Wales (GiW) – based in Cardiff. Some videos were recorded in a research clinic, but most were recorded in the participants own homes.

The videos were coded in 5-minute segments for a large range of behaviours, for example, vocalisations, facial expressions, and body orientation. Then, I used Markov modelling to quantify long-term patterns and transitions between behaviours for 15 distinct thin slices of the full 5-minute interactions, and I compared measures drawn from the full sessions to those from shorter slices.

The paper identified many instances where thin slice sampling was an appropriate coding approach, although there was significant variation across behaviours. From here, I was able to quantify how long is appropriate to code for each behaviour, depending on video context and individual research objectives.

This work constitutes the first project of three that comprise my PhD thesis, and is crucial to its completion. The second project considers a different approach to alleviating the coding burden, and these two works together contribute to the third project, which looks at linking coded facial expressions during parent-infant interactions to parental mental health.’

Link to Paper: https://link.springer.com/article/10.1007/s10919-022-00420-7

Cohort 1 student Romana attends the EAI PervasiveHealth Conference in Greece

Cohort 1 student Romana Burgess attends the 16th EAI International Conference on Pervasive Computing Technologies for Healthcare in Thessaloniki, Greece. This is what she had to say about her experience:

‘It was a small scale conference with around 50 attendees, including a mixture of PhD candidates, masters students, and professors from across Europe, Asia, and America. The conference was generally concerned with the intersection between technology and healthcare. Some of the works presented covered topics such as wearable devices for tracking and monitoring, activity and gesture recognition, and human-centred design for healthcare solutions.

I presented my paper “A quantitative comparison of manual vs. automated facial coding using real life observations of fathers”; this work comprised a validation study on a facial classification software, which we used to classify fathers facial expressions during interactions with their infants. We evaluated whether the computational classification was comparable to that of a human coder. On day 2 of the conference, I gave a roughly 25 minute presentation of this work to the other attendees. The paper is due to be published in the conference proceedings in the coming weeks.

The paper served as software validation work in advance of my final project, which involves linking facial expressions to depressed mood and other mental health issues. So this study (and it’s acceptance to the conference) was vital for the end goal of my overall PhD.’

https://pervasivehealth.eai-conferences.org/2022/

Cohort 1 students Romana, Joe, Morgan & Bridget publish in Human-Computer Interaction Journal

Cohort 1 students Romana Burgess, Joe Mathews, Morgan Jenkinson and Bridget Ellis publish a Journal Article entitled ‘Fathers, Young Children and Technology: Changes in Device Use and Family Dynamics During the COVID-19 UK Lockdown’ in Proceedings of the ACM on Human-Computer Interaction Journal.

They had the following to say about their experience:

‘The coronavirus lockdown measures meant that families spent more time together than ever before, thanks to the shift to online schooling and working from home. By speaking with fathers during this time of stress, uncertainty, and change, we looked to understand changing perceptions of technology use and fatherhood, and we began to consider the design of father-supporting technologies to support fathers.

Our work involved two phases of semi-structured interviews, with participants recruited through social media and word of mouth. The first interviews (n=19) broadly discussed technology and home life during the pandemic, and fathers highlighted challenges in screen viewing, family dynamics, activity idea generation and self-care. Informed by these challenges, we designed four prototype apps which were used as prompts in follow-up interviews (n=12) to better understand the issues in more depth.
Overall, the interviews identified significant changes and concerns related to technology use within the context of COVID-19. Fathers found themselves with changing responsibilities (e.g., home schooling, more childcare), which conflicted with their typical and traditional responsibilities (e.g., work, chores). Combined with pandemic-led stressors, these issues together amplified negative feelings associated with children’s technology use and the father’s own self-care.
The paper provides guidance for fatherhood-supporting technologies. It highlights issues with existing technologies, and the areas where these kinds of support are lacking so far. We provide recommendations based on the feedback of real fathers. Future work could use these recommendations to inform technology design for fathers in a caregiving role.’

Cohort 1 student Henry attends the European Respiratory Society (ERS) International Congress

Henry Glyde presented thematic poster PA2728 “Exacerbation predictive modelling using real-world data from the myCOPD app” as part of the Digital health interventions in respiratory practice session at the European Respiratory Society (ERS) International Congress.

LinkedIn: https://www.linkedin.com/feed/update/urn:li:activity:6972482477261021185/?actorCompanyId=51699863

Cohort 1 student Romana attends the Bumblekite Machine Learning Summer School in Zurich

Romana Burgess had this to say about her experience: This week I attended the Bumblekite Machine Learning Summer School in Healthcare and Biosciences, held at ETH Zurich. The school invited participants from 42 institutions around the world, and a diverse range of speakers from both industry (e.g., Novartis, Microsoft, Genomics England) and academia (e.g., Stanford, ETH, Princeton).
Over the week, I attended many interesting sessions covering a broad range of machine learning topics and applications. For example, we looked at AI techniques for prostate cancer detection, and using fusion models for combining electronic health records and medical images. Additionally, the tutorials provided us with access to some fantastic and unique datasets, allowing us to practice new techniques throughout the week. Each evening I attended an interactive leadership conversation, where academic and industry professionals shared their personal experiences within the ML x Healthcare space. These engaging discussions included ethical considerations in AI and genomics, succeeding in a data science job application, and how to be an inspiring leader.
At the end of the week, we were asked to present on something that we had had learned. My group chose to discuss the benefits and disadvantages of aggregating patient data for use in machine learning models; we discussed loss of information and biased models, versus the importance of patient privacy.
I was fortunate enough that the school organisers gave me the award for “best application” at the end of the school. In my application, I had discussed my desire to learn more about patient care and experience within healthcare systems, and to find new connections. I did in fact build many professional and personal connections with the other applicants over the course of the week; I also spoke with some of the lovely speakers, who gave me great advice and ideas for my own work going forward.
I have always found some more complex machine learning techniques to be intimidating, and I would have been hesitant to try using them myself. However, I have come away from the summer school feeling less apprehensive of these methods, and I believe that some could be worth implementing in my work. For example, I will now consider implementing k-means clustering to identify profiles of depressed or non-depressed parents.

Cohort 1 student Romana Burgess attends micro-coding workshop

CDT Digital Health and Care Cohort 1 student Romana Burgess reports back from the “MHINT micro-coding workshop” that she recently participated in:

On Friday 2nd July, I attended a virtual workshop to discuss micro-coded videos of parent-child interactions, with the aim to foster collaborations moving forward in how to analyse these complicated datasets.

The event joined together 20 academics from multiple countries (e.g. UK, Brazil, Chile, Norway, South Africa), disciplines (e.g. epidemiologists, mathematicians, dieticians, psychologists, biologists), and career levels (e.g. professors, lecturers, post docs, PhD and MSc Students).

Many of these researchers have collected and processed their data, and are now considering how to analyse it. This is a core focus of my PhD, and so I – along with multiple other academics – presented some ideas for potential next stages. For example, how we might use a facial analysis software to automatically capture and describe facial expressions, or how we might identify sequences of behaviours from coded data.

Not only was the workshop beneficial for developing collaborative projects, but it also provided me with an opportunity to practice communicating my research to other academics. Particularly, I was able to practice explaining mathematical and computing-based concepts to those within non-STEM backgrounds.

Participants of the MHINT Micro-coding Workshop
Romana Burgess’ presentation at the MHINT Micro-coding Workshop

Cohort 1 student Harry attends Reinforcement Learning – From Theory to Practice Summer School

CDT student Harry Emerson took part in the Alan Turing Institute Reinforcement Learning – From Theory to Practice Summer School from 1-7 June 2021.

Harry says of the event:

The summer school was a week-long introduction to the theory and implementation of reinforcement learning algorithms, organised by the Alan Turing institute. Each day commenced with a series of online lectures delivered by Dr Nathanaël Fijalkow explaining the mathematics underlying a selection of significant reinforcement learning algorithms. The topics covered were broad, allowing me to learn about a variety of machine learning and deep learning techniques, including Monte Carlo Tree Search, Deep Q Learning and Policy gradient methods. This knowledge was supplemented with daily workshops, where students were divided into structured seminar groups and asked to collaboratively work towards implementing the algorithms described in the morning lecture. This provided me with an opportunity to get feedback on my implementations from experts in the field, as well discuss my research and ideas with other students starting their own research in reinforcement learning.

I am really pleased I had the opportunity to attend the summer school, as it is highly relevant to my PhD project. In the coming years, I will focus on implementing reinforcement learning algorithms to automate the control of insulin delivery for type 1 diabetics. Applying this technique to medical data comes with a series of associated challenges around utilising small and often sparse datasets, minimising patient risk and evaluating algorithmic performance. Having a good foundational understanding of the inner workings and limitations of reinforcement learning algorithms will make me better equipped to overcome these obstacles in my project. The course also gave me the opportunity to discuss my research with individuals working in a diverse range of fields, such as environmental data science and astrophysics. Listening to the successes and difficulties they have had in overcoming the challenges in their research, also provided me with inspiration as to the direction I could go in my own project.